Blog Posts by Andrew B. Collier / @datawookie

A record of some more or less important events in the history of R.

This is a work in progress. The information is cobbled together from a range of sources. If you have pertinent items to add, please let me know via the comments.

By default an EC2 instance has only a single user other than root. For example, on a Ubuntu instance, that user is ubuntu. If there will be multiple people accessing the instance then it’s generally necessary for each of them to have their own account. Setting this up is pretty simple, it just requires sorting out some authentication details.

I’m busy putting together a Docker image for a multi-user Jupyter Notebook installation. I am to have an independent login for each of the users and each of them should also have their own storage space. That space should exist elsewhere from on the container though, so that even if the container stops, the data lives on. This should mitigate user rage.

Amazon’s EC2 Container Services (ECS) is an orchestrated system for deploying Docker containers on AWS. This post is about not using ECS.

I’ll be running a training course in a few weeks which will use RStudio as the main computational tool. Since it’s a short course I don’t want to spend a lot of time sorting out technical issues. And with multiple operating systems (and versions) these issues can be numerous and pervasive. Setting up a RStudio server which everyone can access (and that requires no individual configuration!) makes a lot of sense.

This is what I did to set up Hadoop on my Ubuntu machine.

I’m busy experimenting with Spark. This is what I did to set up a local cluster on my Ubuntu machine. Before you embark on this you should first set up Hadoop.

In the process of uploading a massive CSV file to my Django application my session data are getting pretty big. As a the result I’m getting these errors:

• (1153, "Got a packet bigger than 'max_allowed_packet' bytes") and
• (2006, 'MySQL server has gone away').

The second error is potentially unrelated.

After some research it became apparent that the source of the problem is my max_allowed_packet setting.

I’ve been meaning to set up a VPN and this morning seemed like a good time to tick it off the bucket list. This is a quick outline of my experience, which included one minor hiccup.

A short note on how to set up Jupyter Notebooks with Python 3 on Ubuntu. The instructions are specific to Xenial Xerus (16.04) but are likely to be helpful elsewhere too.

I’m in the process of deploying a scraper on a DigitalOcean instance. The scraper uses RSelenium with the PhantomJS browser. I ran into a problem though. Although it worked flawlessly on my local machine, on the remote instance it broke with an following error.

I have been looking at methods for clustering time domain data and recently read TSclust: An R Package for Time Series Clustering by Pablo Montero and José Vilar. Here are the results of my initial experiments with the TSclust package.

The Bulgaria Web Summit happened on 7 and 8 April 2017 at the Inter Expo Center in Sofia, Bulgaria.

There are a variety of ways to predict running times over the standard marathon distance (42.2 km). You could dust off your copy of The Lore of Running (Tim Noakes). My treasured Third Edition discusses predicting likely marathon times on p. 366, referring to tables published by other authors to actually make predictions. There’s also a variety of online services, for example:

• Runners’ World’s Race Time Predictor (based on Riegel’s Formula),
• Running for Fitness’s Race Predictor and
• Race Result Predictor.

Of these I particularly like the offering from Running for Fitness which produces a neatly tabulated set of predicted times over an extensive range of distances using a selection of techniques including Riegel’s Formula and Cameron’s Model.

Amazon seems to really understand me. Or, at least, my reading preferences. Running, garlic, data. Yup, that pretty much sums me up.

Spent a very diverting few minutes playing with Quick, Draw! this morning, which is one of the cool AI Experiments hosted by Google.

A simple problem sent through to me by one of my running friends:

There are 6 red cards and 1 black card in a box. Busi and Khanya take turns to draw a card at random from the box, with Busi being the first one to draw. The first person who draws the black card will win the game (assume that the game can go on indefinitely). If the cards are drawn with replacement, determine the probability that Khanya will win, showing all working.

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satRday Cape Town will happen on 18 February 2017 at Workshop 17, Victoria & Alfred Waterfront, Cape Town, South Africa.